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Analysis of Biological Networks (BE.440), Fall 2004
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This class analyzes complex biological processes from the molecular, cellular, extracellular, and organ levels of hierarchy. Emphasis is placed on the basic biochemical and biophysical principles that govern these processes. Examples of processes to be studied include chemotaxis, the fixation of nitrogen into organic biological molecules, growth factor and hormone mediated signaling cascades, and signaling cascades leading to cell death in response to DNA damage. In each case, the availability of a resource, or the presence of a stimulus, results in some biochemical pathways being turned on while others are turned off. The course examines the dynamic aspects of these processes and details how biochemical mechanistic themes impinge on molecular/cellular/tissue/organ-level functions. Chemical and quantitative views of the interplay of multiple pathways as biological networks are emphasized. Student work will culminate in the preparation of a unique grant application in an area of biological networks.

Subject:
Biology
Chemistry
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Essigmann, John
Sasisekharan, Ram
Date Added:
01/01/2004
Biology 2e
Unrestricted Use
CC BY
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Biology 2e is designed to cover the scope and sequence requirements of a typical two-semester biology course for science majors. The text provides comprehensive coverage of foundational research and core biology concepts through an evolutionary lens. Biology includes rich features that engage students in scientific inquiry, highlight careers in the biological sciences, and offer everyday applications. The book also includes various types of practice and homework questions that help students understand—and apply—key concepts. The 2nd edition has been revised to incorporate clearer, more current, and more dynamic explanations, while maintaining the same organization as the first edition. Art and illustrations have been substantially improved, and the textbook features additional assessments and related resources.

Subject:
Biology
Material Type:
Full Course
Provider:
Rice University
Provider Set:
OpenStax College
Date Added:
03/07/2018
Biology 2e, The Chemistry of Life, Biological Macromolecules, Nucleic Acids
Unrestricted Use
CC BY
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By the end of this section, you will be able to do the following:

Describe nucleic acids' structure and define the two types of nucleic acids
Explain DNA's structure and role
Explain RNA's structure and roles

Subject:
Applied Science
Material Type:
Module
Provider:
Rice University
Provider Set:
OpenStax College
Date Added:
09/20/2018
Cell Biology, Spring 2007
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Biology of cells of higher organisms: structure, function, and biosynthesis of cellular membranes and organelles; cell growth and oncogenic transformation; transport, receptors and cell signaling; the cytoskeleton, the extracellular matrix, and cell movements; chromatin structure and RNA synthesis.

Subject:
Biology
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Orr-Weaver, Terry
Date Added:
01/01/2007
Cell Biology: Structure and Functions of the Nucleus, Spring 2010
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The goal of this course is to teach both the fundamentals of nuclear cell biology as well as the methodological and experimental approaches upon which they are based. Lectures and class discussions will cover the background and fundamental findings in a particular area of nuclear cell biology. The assigned readings will provide concrete examples of the experimental approaches and logic used to establish these findings. Some examples of topics include genome and systems biology, transcription, and gene expression.

Subject:
Biology
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Sharp, Phillip
Young, Richard
Date Added:
01/01/2010
Computational Functional Genomics, Spring 2005
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Study and discussion of computational approaches and algorithms for contemporary problems in functional genomics. Topics include DNA chip design, experimental data normalization, expression data representation standards, proteomics, gene clustering, self-organizing maps, Boolean networks, statistical graph models, Bayesian network models, continuous dynamic models, statistical metrics for model validation, model elaboration, experiment planning, and the computational complexity of functional genomics problems.

Subject:
Computer Science
Biology
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Gifford, David
Jaakkola, Tommi Sakari
Date Added:
01/01/2005
Concepts of Biology Canvas Course Shell
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This is a Canvas course shell that can be imported into your Canvas course and modified to fit your needs.

Subject:
Biology
Material Type:
Diagram/Illustration
Full Course
Homework/Assignment
Lecture
Lecture Notes
Module
Reading
Student Guide
Syllabus
Teaching/Learning Strategy
Unit of Study
Provider:
LOUIS: The Louisiana Library Network
Author:
Tracie Rizan Bates
Date Added:
03/11/2021
Concepts of Biology Lecture PowerPoints
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The biology material in these PowerPoint presentations comes from an OER (Open Education Resource) textbook. The textbook is Concepts of Biology, by Rice University. The textbook can be found on the following website under the subject of science: https://openstax.org/

Subject:
Biology
Material Type:
Diagram/Illustration
Full Course
Lecture
Lecture Notes
Student Guide
Teaching/Learning Strategy
Unit of Study
Provider:
LOUIS: The Louisiana Library Network
Author:
Tracie Rizan Bates
Date Added:
03/11/2021
Concepts of Biology Modified PowerPoints
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These PowerPoint presentations are a modified version of the PowerPoints that match the OER textbook Concepts of Biology by Rice University.

Subject:
Biology
Material Type:
Diagram/Illustration
Full Course
Lecture
Lecture Notes
Teaching/Learning Strategy
Unit of Study
Provider:
LOUIS: The Louisiana Library Network
Author:
Tracie Rizan Bates
Date Added:
03/11/2021
Concepts of Biology - PDF Version of PowerPoints
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These are the same PowerPoints as the Concepts of Biology textbook PowerPoints, but saved in the PDF format, which is often used for online and hybrid courses. They cannot be modified. If you need to modify the PowerPoints, use the Concepts of Biology textbook PowerPoints version, modify them, and re-save them as a PDF.

Subject:
Biology
Material Type:
Diagram/Illustration
Full Course
Lecture
Lecture Notes
Reading
Student Guide
Teaching/Learning Strategy
Textbook
Unit of Study
Provider:
LOUIS: The Louisiana Library Network
Author:
Tracie Rizan Bates
Date Added:
03/11/2021
Concepts of Biology Vocabulary Worksheets
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These are simple worksheets created using the vocabulary words found at the end of each chapter of the Concepts of Biology by Rice University textbook. They can be modified and can by used as homework assignments, in class activities, extra credit assignments, etc.

Terminology Matching Key is available upon request. Use the Help Center to open a new support ticket to request this.

Subject:
Biology
Material Type:
Assessment
Homework/Assignment
Student Guide
Provider:
LOUIS: The Louisiana Library Network
Author:
Tracie Rizan Bates
Date Added:
03/11/2021
Concepts of Biology by Rice University Textbook Resources for Biology I
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This is information to be used for a General Biology I (or Introduction to Biology) course for non-science majors.

Subject:
Biology
Material Type:
Diagram/Illustration
Full Course
Homework/Assignment
Lecture
Lecture Notes
Module
Reading
Student Guide
Syllabus
Teaching/Learning Strategy
Unit of Study
Author:
Tracie Rizan Bates
Date Added:
08/12/2019
Foundations of Computational and Systems Biology, Spring 2014
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This course is an introduction to computational biology emphasizing the fundamentals of nucleic acid and protein sequence and structural analysis; it also includes an introduction to the analysis of complex biological systems. Topics covered in the course include principles and methods used for sequence alignment, motif finding, structural modeling, structure prediction and network modeling, as well as currently emerging research areas.

Subject:
Biology
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Burge, Christopher
Fraenkel, Ernest
Gifford, David
Date Added:
01/01/2014
The Fountain of Life: From Dolly to Customized Embryonic Stem Cells, Fall 2007
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" During development, the genetic content of each cell remains, with a few exceptions, identical to that of the zygote. Most differentiated cells therefore retain all of the genetic information necessary to generate an entire organism. It was through pioneering technology of somatic cell nuclear transfer (SCNT) that this concept was experimentally proven. Only 10 years ago the sheep Dolly was the first mammal to be cloned from an adult organism, demonstrating that the differentiated state of a mammalian cell can be fully reversible to a pluripotent embryonic state. A key conclusion from these experiments was that the difference between pluripotent cells such as embryonic stem (ES) cells and unipotent differentiated cells is solely a consequence of reversible changes. These changes, which have proved to involve reversible alterations to both DNA and to proteins that bind DNA, are known as epigenetic, to distinguish them from genetic alterations to DNA sequence. In this course we will explore such epigenetic changes and study different approaches that can return a differentiated cell to an embryonic state in a process referred to as epigenetic reprogramming, which will ultimately allow generation of patient-specific stem cells and application to regenerative therapy. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching."

Subject:
Biology
Genetics
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Meissner, Alexander
Date Added:
01/01/2007
Freshman Seminar: Structural Basis of Genetic Material: Nucleic Acids, Fall 2005
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Since the discovery of the structure of the DNA double helix in 1953 by Watson and Crick, the information on detailed molecular structures of DNA and RNA, namely, the foundation of genetic material, has expanded rapidly. This discovery is the beginning of the "Big Bang" of molecular biology and biotechnology. In this seminar, students discuss, from a historical perspective and current developments, the importance of pursuing the detailed structural basis of genetic materials.

Subject:
Biology
Genetics
Material Type:
Full Course
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Zhang, Shuguang
Date Added:
01/01/2005
Genetics
Unrestricted Use
CC BY
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Genetics is the branch of biology that studies the means by which traits are passed on from one generation to the next and the causes of similarities and differences between related individuals. In this course, the student will take a close look at chromosomes, DNA, and genes. The student will learn how hereditary information is transferred, how it can change, how it can lead to human disease and be tested to indicate disease, and much more. Upon successful completion of this course, students will be able to: give a brief synopsis of the history of genetics by explaining the fundamental genetic concepts covered in this course as they were discovered through time; identify the links between Mendel's discoveries (often represented by Punnett squares) with mitosis and meiosis, dominance, penetrance, and linkage; recognize the role of simple probability in genetic inheritance; apply advanced genetic concepts, including genetic mapping and transposons, to practical applications, including pedigree analysis and corn kernel color; identify the cause behind several genetic diseases currently prevalent in society (such as color blindness and hemophilia) and recognize the importance of genetic illness throughout history; compare and contrast advanced concepts of chromosomal, bacterial, human, and population genetics; recognize the similarities and differences between nuclear, chloroplast, and mitochondrial DNA; describe the fundamentals of population genetics, calculate gene frequencies in a give scenario, predict future gene frequencies over future generations, and define the role of evolution in gene frequency shift over time; recall, analyze, synthesize, and build on the foundational material to then learn the cutting-edge technological advances in genetics, including genomics, population and evolutionary genetics, and QTL mapping. (Biology 305)

Subject:
Biology
Genetics
Material Type:
Full Course
Provider:
The Saylor Foundation
Date Added:
04/29/2019
Genetics, Fall 2004
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The principles of genetics with application to the study of biological function at the level of molecules, cells, and multicellular organisms, including humans. Structure and function of genes, chromosomes and genomes. Biological variation resulting from recombination, mutation, and selection. Population genetics. Use of genetic methods to analyze protein function, gene regulation and inherited disease.

Subject:
Education
Natural Science
Biology
Genetics
Material Type:
Activity/Lab
Assessment
Diagram/Illustration
Full Course
Homework/Assignment
Lecture Notes
Student Guide
Syllabus
Provider:
M.I.T.
Provider Set:
M.I.T. OpenCourseWare
Author:
Fink, Gerald
Kaiser, Chris
Mischke, Michelle
Samson, Leona
Date Added:
01/01/2004